About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides08698REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08699REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides08700OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides08701NETRIN RECEPTOR UNC5
Paelopatides08702RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides08703ENDONUCLEASE-RELATED
Paelopatides08704REVERSE TRANSCRIPTASES
Paelopatides08705ENZYMATIC POLYPROTEIN-RELATED
Paelopatides08706-
Paelopatides08707-
Paelopatides08708-
Paelopatides08709TRANSPOSASE, PUTATIVE-RELATED
Paelopatides08710-
Paelopatides08711PROTEIN CBG23806
Paelopatides08712-
Paelopatides08715-
Paelopatides08716TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides08717TRANSMEMBRANE PROTEIN KIAA1109
Paelopatides08718CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides08719SET DOMAIN-CONTAINING PROTEIN-RELATED
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