About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09577ANKYRIN REPEAT DOMAIN 40
Paelopatides09578MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22
Paelopatides09579MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22
Paelopatides09580REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09581PROTEIN CBG26694
Paelopatides09582PROTEIN CBG26694
Paelopatides09583-
Paelopatides09584SUSHI DOMAIN-CONTAINING PROTEIN 1
Paelopatides09585EG:EG0003.4 PROTEIN-RELATED
Paelopatides09586EG:EG0003.4 PROTEIN-RELATED
Paelopatides09587-
Paelopatides09588EG:EG0003.4 PROTEIN-RELATED
Paelopatides09589-
Paelopatides09590REVERSE TRANSCRIPTASE
Paelopatides09591FRUCTOSE-1,6-BISPHOSPHATASE-RELATED
Paelopatides09592-
Paelopatides09593SORTING NEXIN
Paelopatides09594PROTEIN CBG07384
Paelopatides09595MACROGLOBULIN / COMPLEMENT
Paelopatides09596HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
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