About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09827BUCENTAUR RELATED
Paelopatides09828CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides09829-
Paelopatides09830NETRIN RECEPTOR UNC5
Paelopatides09831-
Paelopatides09832ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides09833GAG-RELATED PROTEIN
Paelopatides09834-
Paelopatides09835-
Paelopatides09836HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED
Paelopatides09837DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
Paelopatides09838REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09839VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Paelopatides09841INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides09842-
Paelopatides09843REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09844VASCULAR CELL ADHESION MOLECULE 1
Paelopatides09845TYROSINE-PROTEIN KINASE
Paelopatides09846-
Paelopatides09847HEH2P
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