About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09888TRANSPOSON
Paelopatides09889-
Paelopatides09890ENDONUCLEASE-RELATED
Paelopatides09891-
Paelopatides09892GAG-RELATED PROTEIN
Paelopatides09893REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09894-
Paelopatides09895-
Paelopatides09896FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides09897TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides09898ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides09899ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
Paelopatides09900NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides09901-
Paelopatides09902UNCHARACTERIZED
Paelopatides09903UNCHARACTERIZED
Paelopatides09904-
Paelopatides09905-
Paelopatides09906RETICULOCALBIN
Paelopatides09907-
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