Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s079.g0069.t1 | SWIM-TYPE DOMAIN-CONTAINING PROTEIN |
| Lsat_s079.g0070.t1 | REGULATOR OF CHROMOSOME CONDENSATION |
| Lsat_s079.g0071.t1 | |
| Lsat_s079.g0072.t1 | |
| Lsat_s079.g0073.t1 | |
| Lsat_s079.g0074.t1 | - |
| Lsat_s079.g0075.t1 | JNK/SAPK-ASSOCIATED PROTEIN |
| Lsat_s079.g0076.t1 | |
| Lsat_s079.g0077.t1 | |
| Lsat_s079.g0078.t1 | ADENYLATE CYCLASE TYPE 1 |
| Lsat_s079.g0079.t1 | EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN |
| Lsat_s079.g0080.t1 | OTU DOMAIN CONTAINING PROTEIN |
| Lsat_s079.g0081.t1 | TRANSCRIPTION FACTOR SPT20 HOMOLOG |
| Lsat_s079.g0082.t1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON |
| Lsat_s079.g0083.t1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
| Lsat_s079.g0084.t1 | PRE-MRNA CLEAVAGE COMPLEX II |
| Lsat_s079.g0085.t1 | RAS-RELATED PROTEIN RAB |
| Lsat_s079.g0086.t1 | LORICRIN |
| Lsat_s079.g0087.t1 | - |
| Lsat_s079.g0088.t1 | - |
| Lsat_s079.g0089.t1 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
| Lsat_s079.g0090.t1 | MALATE SYNTHASE |
| Lsat_s079.g0091.t1 | |
| Lsat_s079.g0092.t1 | |
| Lsat_s079.g0093.t1 | LIN-24 (TWENTY-FOUR) LIKE |
| Lsat_s079.g0094.t1 | LIN-24 (TWENTY-FOUR) LIKE |
| Lsat_s079.g0095.t1 | |
| Lsat_s079.g0096.t1 | |
| Lsat_s079.g0097.t1 | AMPHOTERIN-INDUCED PROTEIN |
| Lsat_s079.g0098.t1 | |
| Lsat_s079.g0099.t1 | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED |
| Lsat_s079.g0100.t1 | QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE |
| Lsat_s079.g0101.t1 | THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED |
| Lsat_s079.g0102.t1 | SERINE/THREONINE-RICH PROTEIN ADG2-RELATED |
| Lsat_s079.g0103.t1 | |
| Lsat_s079.g0104.t1 | |
| Lsat_s079.g0105.t1 | |
| Lsat_s079.g0106.t1 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Lsat_s079.g0107.t1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Lsat_s079.g0108.t1 | SI:DKEY-9I5.2-RELATED |
| Lsat_s080.g0001.t1 | |
| Lsat_s080.g0002.t1 | |
| Lsat_s080.g0003.t1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| Lsat_s080.g0004.t1 | CCAAT-BINDING FACTOR-RELATED |
| Lsat_s080.g0005.t1 | GLYCOGEN PHOSPHORYLASE |
| Lsat_s080.g0006.t1 | ELONGATION FACTOR 1-GAMMA |
| Lsat_s080.g0007.t1 | PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1 |
| Lsat_s080.g0008.t1 | |
| Lsat_s080.g0009.t1 | PERIAXIN/AHNAK |
| Lsat_s080.g0010.t1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
