Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s080.g0011.t1 | CALMODULIN-LYSINE N-METHYLTRANSFERASE |
| Lsat_s080.g0012.t1 | |
| Lsat_s080.g0013.t1 | RIBOSOMAL PROTEIN S6 KINASE |
| Lsat_s080.g0014.t1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| Lsat_s080.g0015.t1 | TRNA METHYLTRANSFERASE |
| Lsat_s080.g0016.t1 | CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1 |
| Lsat_s080.g0017.t1 | FMRFAMIDE RECEPTOR-RELATED |
| Lsat_s080.g0018.t1 | |
| Lsat_s080.g0019.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s080.g0020.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s080.g0021.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s080.g0022.t1 | HISTIDINE-RICH GLYCOPROTEIN |
| Lsat_s080.g0023.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s080.g0024.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s080.g0025.t1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
| Lsat_s080.g0026.t1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
| Lsat_s080.g0027.t1 | ACTIN |
| Lsat_s080.g0028.t1 | E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED |
| Lsat_s080.g0029.t1 | MALE FERTILITY FACTOR KL5 |
| Lsat_s080.g0030.t1 | |
| Lsat_s080.g0031.t1 | |
| Lsat_s080.g0032.t1 | PROTEIN BARK BEETLE |
| Lsat_s080.g0033.t1 | DEFECTIVE SPERMATOGENESIS PROTEIN 39 |
| Lsat_s080.g0034.t1 | CYSTATIN |
| Lsat_s080.g0035.t1 | LD27203P-RELATED |
| Lsat_s080.g0036.t1 | SYNDROMES PUTATIVE CHAPERONIN-RELATED |
| Lsat_s080.g0037.t1 | |
| Lsat_s080.g0038.t1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
| Lsat_s080.g0039.t1 | ALPHA-AMYLASE FAMILY MEMBER |
| Lsat_s080.g0040.t1 | |
| Lsat_s080.g0041.t1 | UNCHARACTERIZED |
| Lsat_s080.g0042.t1 | UNCHARACTERIZED |
| Lsat_s080.g0043.t1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| Lsat_s080.g0044.t1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED |
| Lsat_s080.g0045.t1 | L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
| Lsat_s080.g0046.t1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Lsat_s080.g0047.t1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| Lsat_s080.g0048.t1 | DESUMOYLATING ISOPEPTIDASE |
| Lsat_s080.g0049.t1 | STG PROTEIN |
| Lsat_s080.g0050.t1 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H |
| Lsat_s080.g0051.t1 | XANTHINE DEHYDROGENASE |
| Lsat_s080.g0052.t1 | PEPTIDYLPROLYL ISOMERASE |
| Lsat_s080.g0053.t1 | AN1-TYPE ZINC FINGER PROTEIN |
| Lsat_s080.g0054.t1 | |
| Lsat_s080.g0055.t1 | |
| Lsat_s080.g0056.t1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| Lsat_s080.g0057.t1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
| Lsat_s080.g0058.t1 | UNCHARACTERIZED |
| Lsat_s080.g0059.t1 | B9 DOMAIN-CONTAINING |
| Lsat_s080.g0060.t1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
