About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110 Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s081.g0002.t1GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE
Lsat_s081.g0003.t1ZINC FINGER PROTEIN
Lsat_s081.g0004.t1SIMILAR TO RIKEN CDNA E130308A19
Lsat_s081.g0005.t1TRNA MODIFICATION GTPASE GTPBP3
Lsat_s081.g0006.t1WDR41-RELATED
Lsat_s081.g0007.t1AHD DOMAIN-CONTAINING PROTEIN
Lsat_s081.g0008.t1LOC361192
Lsat_s081.g0009.t1
Lsat_s081.g0010.t1NEGATIVE ELONGATION FACTOR A NELF-A
Lsat_s081.g0011.t1TOL-PAL SYSTEM PROTEIN TOLA
Lsat_s081.g0012.t1-
Lsat_s081.g0013.t1NUCLEAR HORMONE RECEPTOR HR3-RELATED
Lsat_s081.g0014.t1
Lsat_s081.g0015.t1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Lsat_s081.g0016.t1
Lsat_s081.g0017.t1
Lsat_s081.g0018.t1-
Lsat_s081.g0019.t1EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Lsat_s081.g0020.t1N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE
Lsat_s081.g0021.t1
Lsat_s081.g0022.t1
Lsat_s081.g0023.t1LEUCINE-RICH REPEAT-CONTAINING
Lsat_s081.g0024.t1-
Lsat_s081.g0025.t1
Lsat_s081.g0026.t1G-PROTEIN COUPLED RECEPTOR
Lsat_s081.g0027.t1
Lsat_s081.g0028.t1
Lsat_s081.g0029.t1ADHESION G-PROTEIN COUPLED RECEPTOR
Lsat_s081.g0030.t1
Lsat_s081.g0031.t1
Lsat_s081.g0032.t1
Lsat_s081.g0033.t1LUNG ADENOMA SUSCEPTIBILITY PROTEIN 2
Lsat_s081.g0034.t1AQUAPORIN OR AQUAGLYCEROPORIN RELATED
Lsat_s081.g0035.t1TYROSINE-PROTEIN KINASE RECEPTOR
Lsat_s081.g0036.t1
Lsat_s081.g0037.t1TYROSINE-PROTEIN KINASE HOPSCOTCH
Lsat_s081.g0038.t1EGF-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s081.g0039.t1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Lsat_s081.g0040.t1EGF-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s081.g0041.t1EGF-LIKE DOMAIN-CONTAINING PROTEIN
Lsat_s081.g0042.t1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Lsat_s081.g0043.t1DNA-DIRECTED RNA POLYMERASE III
Lsat_s081.g0044.t1PHOSPHOMEVALONATE KINASE
Lsat_s081.g0045.t1TPR REPEAT CONTAINING PROTEIN
Lsat_s081.g0046.t1DET1- AND DDB1-ASSOCIATED PROTEIN 1
Lsat_s081.g0047.t126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
Lsat_s081.g0048.t1ANKYRIN REPEAT PROTEIN
Lsat_s081.g0049.t1
Lsat_s081.g0050.t1METHYL-CPG BINDING PROTEIN, MBD
Lsat_s081.g0051.t1PROTEIN CBG11839-RELATED
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