About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10231ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10232-
Paelopatides10233-
Paelopatides10234VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN
Paelopatides10235DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Paelopatides10236PARANEOPLASTIC ANTIGEN
Paelopatides10237POL PROTEIN
Paelopatides10238ENDONUCLEASE-RELATED
Paelopatides10239CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10240ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides10241PROTEIN CBG26694
Paelopatides10242UV-STIMULATED SCAFFOLD PROTEIN A
Paelopatides10243UV-STIMULATED SCAFFOLD PROTEIN A
Paelopatides10244SPLICING FACTOR SF3A-RELATED
Paelopatides10245-
Paelopatides10246ZINC FINGER AND BTB DOMAIN-CONTAINING
Paelopatides10247-
Paelopatides10248CENTROSOMAL PROTEIN 2
Paelopatides10249FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides10250FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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