About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10190UNCHARACTERIZED
Paelopatides10191ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
Paelopatides10193-
Paelopatides10194REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10195RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Paelopatides10196RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
Paelopatides10197HOMER
Paelopatides10198PEROXISOMAL SARCOSINE OXIDASE
Paelopatides10199PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL
Paelopatides10200GEM-ASSOCIATED PROTEIN 5
Paelopatides10201WD-40 REPEAT PROTEIN
Paelopatides10202BONUS, ISOFORM C-RELATED
Paelopatides10203CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
Paelopatides10204SECY/SEC61-ALPHA FAMILY MEMBER
Paelopatides10205TRANSCRIPTION FACTOR GATA FAMILY MEMBER
Paelopatides10206-
Paelopatides10207PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides10208RETROTRANSPOSON
Paelopatides10209UNCHARACTERIZED
Paelopatides10210REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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