About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10168NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides10169OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides10170MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Paelopatides10171UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides10172TESTIS-EXPRESSED PROTEIN 264
Paelopatides10173PROPERDIN
Paelopatides10174-
Paelopatides10175-
Paelopatides10176NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides10177CEREBRAL PROTEIN-11-RELATED
Paelopatides10178-
Paelopatides10179ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10180-
Paelopatides10181PROTEIN CBG26694
Paelopatides10182PROTEIN CBG26694
Paelopatides10183-
Paelopatides10184-
Paelopatides10185TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides10186DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides10189ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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