About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10251-
Paelopatides10252RUVB-RELATED REPTIN AND PONTIN
Paelopatides10253ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10254GAG-RELATED PROTEIN
Paelopatides10255OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides10256-
Paelopatides10257REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10258-
Paelopatides10259PROTEIN CBG26694
Paelopatides10260PROTEIN CBG26694
Paelopatides10261PROTEIN CBG26694
Paelopatides10262TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
Paelopatides10263ZINC FINGER AND BTB DOMAIN-CONTAINING
Paelopatides10265CENTRIOLAR COILED-COIL PROTEIN OF 110 KDA
Paelopatides10266UNCHARACTERIZED
Paelopatides10267CHAPERONIN
Paelopatides10268TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides10269-
Paelopatides10270MENORIN (DENDRITIC BRANCHING PROTEIN)
Paelopatides10271TRANSCRIPTION INITIATION FACTOR TFIID
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