Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s090.g0051.t1 | D123 PROTEIN |
| Lsat_s090.g0052.t1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| Lsat_s090.g0053.t1 | WD REPEAT-CONTAINING PROTEIN 43 |
| Lsat_s090.g0054.t1 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
| Lsat_s090.g0055.t1 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| Lsat_s090.g0056.t1 | MALONATE-SEMIALDEHYDE DEHYDROGENASE |
| Lsat_s090.g0057.t1 | |
| Lsat_s090.g0058.t1 | DUAL SPECIFICITY PROTEIN KINASE |
| Lsat_s090.g0059.t1 | |
| Lsat_s090.g0060.t1 | |
| Lsat_s090.g0061.t1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| Lsat_s090.g0062.t1 | MATING RESPONSE PROTEIN POI2 |
| Lsat_s090.g0063.t1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| Lsat_s090.g0064.t1 | SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN |
| Lsat_s090.g0065.t1 | REMODELING AND SPACING FACTOR 1 |
| Lsat_s090.g0066.t1 | |
| Lsat_s090.g0067.t1 | |
| Lsat_s090.g0068.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Lsat_s090.g0069.t1 | |
| Lsat_s090.g0070.t1 | BLR2807 PROTEIN |
| Lsat_s090.g0071.t1 | |
| Lsat_s090.g0072.t1 | MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN |
| Lsat_s090.g0073.t1 | CORNICHON-RELATED |
| Lsat_s090.g0074.t1 | WD REPEAT PROTEIN 26-RELATED |
| Lsat_s090.g0075.t1 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
| Lsat_s090.g0076.t1 | SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B |
| Lsat_s090.g0077.t1 | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s090.g0078.t1 | IKB KINASE |
| Lsat_s090.g0079.t1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Lsat_s090.g0080.t1 | ELONGATION FACTOR G, MITOCHONDRIAL |
| Lsat_s090.g0081.t1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 33 |
| Lsat_s090.g0082.t1 | |
| Lsat_s090.g0083.t1 | FACIOGENITAL DYSPLASIA PROTEIN |
| Lsat_s090.g0084.t1 | SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 8 |
| Lsat_s090.g0085.t1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| Lsat_s090.g0086.t1 | APOPTOSIS REGULATORY PROTEIN SIVA |
| Lsat_s090.g0087.t1 | CODANIN-1 |
| Lsat_s090.g0088.t1 | |
| Lsat_s090.g0089.t1 | |
| Lsat_s090.g0090.t1 | |
| Lsat_s090.g0091.t1 | FIBROUS SHEATH CABYR-BINDING PROTEIN |
| Lsat_s090.g0092.t1 | |
| Lsat_s091.g0001.t1 | COILED COIL DOMAIN-CONTAINING PROTEIN 8, CCDC8 |
| Lsat_s091.g0002.t1 | |
| Lsat_s091.g0003.t1 | |
| Lsat_s091.g0004.t1 | CYTOKINE RECEPTOR |
| Lsat_s091.g0005.t1 | |
| Lsat_s091.g0006.t1 | |
| Lsat_s091.g0007.t1 | |
| Lsat_s091.g0008.t1 |
