Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s091.g0059.t1 | SOLUTE CARRIER FAMILY 13 MEMBER |
Lsat_s091.g0060.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Lsat_s091.g0061.t1 | |
Lsat_s091.g0062.t1 | SOLUTE CARRIER FAMILY 13 MEMBER |
Lsat_s091.g0063.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Lsat_s091.g0064.t1 | |
Lsat_s091.g0065.t1 | |
Lsat_s091.g0066.t1 | BONE MARROW PROTEOGLYCAN |
Lsat_s091.g0067.t1 | |
Lsat_s091.g0068.t1 | |
Lsat_s091.g0069.t1 | |
Lsat_s091.g0070.t1 | DED DOMAIN-CONTAINING PROTEIN |
Lsat_s091.g0071.t1 | RING FINGER PROTEIN 25 |
Lsat_s091.g0072.t1 | DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1 |
Lsat_s091.g0073.t1 | OPTICIN |
Lsat_s091.g0074.t1 | |
Lsat_s091.g0075.t1 | OPTICIN |
Lsat_s091.g0076.t1 | |
Lsat_s092.g0001.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Lsat_s092.g0002.t1 | HOMER |
Lsat_s092.g0003.t1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
Lsat_s092.g0004.t1 | DUF614 FAMILY PROTEIN-RELATED |
Lsat_s092.g0005.t1 | ALDEHYDE DEHYDROGENASE-RELATED |
Lsat_s092.g0006.t1 | |
Lsat_s092.g0007.t1 | |
Lsat_s092.g0008.t1 | |
Lsat_s092.g0009.t1 | |
Lsat_s092.g0010.t1 | LD44032P |
Lsat_s092.g0011.t1 | |
Lsat_s092.g0012.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
Lsat_s092.g0013.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
Lsat_s092.g0014.t1 | |
Lsat_s092.g0015.t1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
Lsat_s092.g0016.t1 | |
Lsat_s092.g0017.t1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
Lsat_s092.g0018.t1 | P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED |
Lsat_s092.g0019.t1 | |
Lsat_s092.g0020.t1 | BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1 |
Lsat_s092.g0021.t1 | AMINOMETHYLTRANSFERASE |
Lsat_s092.g0022.t1 | AMINOMETHYLTRANSFERASE |
Lsat_s092.g0023.t1 | ZINC/IRON TRANSPORTER |
Lsat_s092.g0024.t1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
Lsat_s092.g0025.t1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
Lsat_s092.g0026.t1 | HELIX LOOP HELIX PROTEIN 21-RELATED |
Lsat_s092.g0027.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
Lsat_s092.g0028.t1 | |
Lsat_s092.g0029.t1 | |
Lsat_s092.g0030.t1 | |
Lsat_s092.g0031.t1 | |
Lsat_s092.g0032.t1 |