Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s092.g0083.t1 | F-BOX/WD REPEAT-CONTAINING PROTEIN 2 |
Lsat_s092.g0084.t1 | ZINC FINGER PROTEIN |
Lsat_s092.g0085.t1 | |
Lsat_s092.g0086.t1 | |
Lsat_s092.g0087.t1 | NUDIX HYDROLASE, NUDC SUBFAMILY |
Lsat_s092.g0088.t1 | |
Lsat_s092.g0089.t1 | |
Lsat_s092.g0090.t1 | MEF2B PROTEIN |
Lsat_s092.g0091.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Lsat_s092.g0092.t1 | FUKUTIN RELATED PROTEIN |
Lsat_s092.g0093.t1 | |
Lsat_s092.g0094.t1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
Lsat_s092.g0095.t1 | UNCHARACTERIZED |
Lsat_s092.g0096.t1 | |
Lsat_s092.g0097.t1 | PIKACHURIN-LIKE PROTEIN |
Lsat_s093.g0001.t1 | PALMITOYLTRANSFERASE |
Lsat_s093.g0002.t1 | |
Lsat_s093.g0003.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
Lsat_s093.g0004.t1 | MUCIN 4-RELATED |
Lsat_s093.g0005.t1 | |
Lsat_s093.g0006.t1 | |
Lsat_s093.g0007.t1 | |
Lsat_s093.g0008.t1 | SOLUTE CARRIER FAMILY 22 MEMBER |
Lsat_s093.g0009.t1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Lsat_s093.g0010.t1 | |
Lsat_s093.g0011.t1 | |
Lsat_s093.g0012.t1 | |
Lsat_s093.g0013.t1 | DEOXYRIBONUCLEASE |
Lsat_s093.g0014.t1 | ZINC FINGER PROTEIN |
Lsat_s093.g0015.t1 | ZINC FINGER PROTEIN |
Lsat_s093.g0016.t1 | URIDINE PHOSPHORYLASE |
Lsat_s093.g0017.t1 | CELL DIVISION PROTEIN KINASE |
Lsat_s093.g0018.t1 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION |
Lsat_s093.g0019.t1 | NGFI-A BINDING PROTEIN |
Lsat_s093.g0020.t1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
Lsat_s093.g0021.t1 | AMPHIPHYSIN |
Lsat_s093.g0022.t1 | |
Lsat_s093.g0023.t1 | STEROL DESATURASE-RELATED PROTEIN |
Lsat_s093.g0024.t1 | |
Lsat_s093.g0025.t1 | STEROL DESATURASE-RELATED PROTEIN |
Lsat_s093.g0026.t1 | MICROTUBULE-ASSOCIATED PROTEIN |
Lsat_s093.g0027.t1 | |
Lsat_s093.g0028.t1 | MICROTUBULE-ASSOCIATED PROTEIN |
Lsat_s093.g0029.t1 | |
Lsat_s093.g0030.t1 | SOLUTE CARRIER FAMILY 35 |
Lsat_s093.g0031.t1 | |
Lsat_s093.g0032.t1 | |
Lsat_s093.g0033.t1 | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER |
Lsat_s093.g0034.t1 | SPORE COAT PROTEIN SP85 |
Lsat_s093.g0035.t1 | CALPAIN |