Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s093.g0036.t1 | |
Lsat_s093.g0037.t1 | CHITINASE |
Lsat_s093.g0038.t1 | ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED |
Lsat_s093.g0039.t1 | |
Lsat_s093.g0040.t1 | CRUMBS FAMILY MEMBER |
Lsat_s093.g0041.t1 | |
Lsat_s093.g0042.t1 | TETRASPANIN |
Lsat_s093.g0043.t1 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
Lsat_s093.g0044.t1 | ASAP FAMILY MEMBER |
Lsat_s093.g0045.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 60 |
Lsat_s093.g0046.t1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
Lsat_s093.g0047.t1 | |
Lsat_s093.g0048.t1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Lsat_s093.g0049.t1 | LEISHMANOLYSIN-LIKE PEPTIDASE |
Lsat_s093.g0050.t1 | ALTERNATIVE OXIDASE |
Lsat_s093.g0051.t1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
Lsat_s093.g0052.t1 | MOLYBDOPTERIN COFACTOR SULFURASE MOSC |
Lsat_s093.g0053.t1 | |
Lsat_s093.g0054.t1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
Lsat_s093.g0055.t1 | |
Lsat_s093.g0056.t1 | UNCHARACTERIZED |
Lsat_s093.g0057.t1 | |
Lsat_s093.g0058.t1 | |
Lsat_s093.g0059.t1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Lsat_s093.g0060.t1 | MIR-INTERACTING SAPOSIN-LIKE PROTEIN |
Lsat_s093.g0061.t1 | |
Lsat_s093.g0062.t1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE |
Lsat_s093.g0063.t1 | PROTEIN FAM221A-RELATED |
Lsat_s093.g0064.t1 | FAM11A, B PROTEIN |
Lsat_s093.g0065.t1 | |
Lsat_s093.g0066.t1 | - |
Lsat_s093.g0067.t1 | LD33804P |
Lsat_s093.g0068.t1 | |
Lsat_s093.g0069.t1 | - |
Lsat_s093.g0070.t1 | - |
Lsat_s093.g0071.t1 | - |
Lsat_s093.g0072.t1 | - |
Lsat_s093.g0073.t1 | RIBOPHORIN II |
Lsat_s093.g0074.t1 | TUMOR PROTEIN D52 |
Lsat_s093.g0075.t1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
Lsat_s093.g0076.t1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
Lsat_s094.g0001.t1 | |
Lsat_s094.g0002.t1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
Lsat_s094.g0003.t1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
Lsat_s094.g0004.t1 | ALANINE RACEMASE |
Lsat_s094.g0005.t1 | ALANINE RACEMASE |
Lsat_s094.g0006.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
Lsat_s094.g0007.t1 | SOLUTE CARRIER FAMILY 22 MEMBER |
Lsat_s094.g0008.t1 | ELONGATOR COMPLEX PROTEIN 1 |
Lsat_s094.g0009.t1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |