About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10747-
Paelopatides10748SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Paelopatides10749-
Paelopatides10750ENDONUCLEASE
Paelopatides10751-
Paelopatides10752GAG-RELATED PROTEIN
Paelopatides10753ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10754ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides10755BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6
Paelopatides10756REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10757RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides10758AP ENDONUCLEASE
Paelopatides10759-
Paelopatides10761IP13529P
Paelopatides10762SI:CH211-196P9.1-RELATED
Paelopatides10763REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10764HELICASE WITH DEATH DOMAIN-RELATED
Paelopatides10765NXPE FAMILY MEMBER
Paelopatides10766NXPE FAMILY MEMBER
Paelopatides10767-
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