About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10809HELICASE
Paelopatides10810DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS
Paelopatides10811GLUTATHIONE SYNTHETASE
Paelopatides10812TELOMERE LENGTH REGULATION PROTEIN TEL2 FAMILY MEMBER
Paelopatides10813TELOMERE LENGTH REGULATION PROTEIN TEL2 FAMILY MEMBER
Paelopatides10814REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10815PROTEIN CBG26694
Paelopatides10816ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10817ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10818REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides10819-
Paelopatides10820-
Paelopatides10821DNA-REPAIR PROTEIN XRCC1
Paelopatides10822DNA-REPAIR PROTEIN XRCC1
Paelopatides10823ENDONUCLEASE-RELATED
Paelopatides10824NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
Paelopatides10825-
Paelopatides10826ENDONUCLEASE-RELATED
Paelopatides10827RETROTRANSPOSON
Paelopatides10828PHD-TYPE DOMAIN-CONTAINING PROTEIN
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