About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides10788-
Paelopatides10789SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides10790-
Paelopatides10791ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides10792NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
Paelopatides10793BUCENTAUR RELATED
Paelopatides10794NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
Paelopatides10795NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1
Paelopatides10796PROTEIN YAE1 HOMOLOG
Paelopatides10797CORDON-BLEU
Paelopatides10798LEUCOKININ RECEPTOR-RELATED
Paelopatides10799ALPHA-TECTORIN-RELATED
Paelopatides10800FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides10801-
Paelopatides10802-
Paelopatides10804-
Paelopatides10805POL PROTEIN
Paelopatides10806POL PROTEIN
Paelopatides10807ENDONUCLEASE-RELATED
Paelopatides10808ENDONUCLEASE-RELATED
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