About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11441REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11442ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides11443ENDONUCLEASE-RELATED
Paelopatides11444HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER
Paelopatides11445PROTEIN CBG26694
Paelopatides11446PROTEIN CBG26694
Paelopatides11447-
Paelopatides11448LIPOXYGENASE
Paelopatides11449SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT
Paelopatides11450SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT
Paelopatides11451REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11452TRANSPOSON
Paelopatides11453-
Paelopatides11454RETROTRANSPOSON
Paelopatides11455PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides11456-
Paelopatides11457REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11458GUANYLATE BINDING PROTEIN
Paelopatides11459ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides11460MULTICOPPER OXIDASE-RELATED
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