About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11421ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides11422ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides11423ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides11424PROTEIN CBG26694
Paelopatides11425-
Paelopatides11426ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides11427ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides11428CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides11429CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides11430LEUCOKININ RECEPTOR-RELATED
Paelopatides11431PROTEIN CBG26694
Paelopatides11432-
Paelopatides1143326S PROTEASOME REGULATORY SUBUNIT
Paelopatides1143426S PROTEASOME REGULATORY SUBUNIT
Paelopatides11435POL PROTEIN
Paelopatides11436-
Paelopatides11437-
Paelopatides11438-
Paelopatides11439BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
Paelopatides11440-
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