About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11523XANTHINE DEHYDROGENASE
Paelopatides11524MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
Paelopatides11525-
Paelopatides11526PROTEIN CBG26694
Paelopatides11527PROTEIN CBG26694
Paelopatides11528INHIBITOR OF APOPTOSIS
Paelopatides11529ENDONUCLEASE-RELATED
Paelopatides11530INHIBITOR OF APOPTOSIS
Paelopatides11531CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides11532CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides11534DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides11535-
Paelopatides11536ROUND SPERMATID BASIC PROTEIN 1
Paelopatides11537TRANSAMIDASE
Paelopatides11538-
Paelopatides11539CRUMBS FAMILY MEMBER
Paelopatides11540-
Paelopatides11541EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides11542PROTEIN CBG26694
Paelopatides11543PROTEIN CBG26694
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