About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11610INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED
Paelopatides11611-
Paelopatides11612-
Paelopatides11613ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides11614ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides11615-
Paelopatides11616T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides11617DOWNSTREAM NEIGHBOR OF SON
Paelopatides11618CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides11619CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides11620FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides11621-
Paelopatides11622EPM2A-INTERACTING PROTEIN 1
Paelopatides11623BETA1,3-GALACTOSYLTRANSFERASE
Paelopatides11624-
Paelopatides11625CYTOCHROME P450 20A1
Paelopatides11626TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides11627REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11628-
Paelopatides11629PEROXISOME BIOGENESIS FACTOR 2
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