About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12151-
Paelopatides12152-
Paelopatides12153PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides12154COPINE
Paelopatides12155ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10
Paelopatides12156-
Paelopatides12157RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B
Paelopatides12158-
Paelopatides12159NITRILASE-RELATED
Paelopatides12160-
Paelopatides12161CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12162TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides12163TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides12164-
Paelopatides12165HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides12166MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides12167MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides12168POL PROTEIN
Paelopatides12169-
Paelopatides12170-
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