About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12570PROTEIN CBG26694
Paelopatides12571CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12572CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12573GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides12574FRIZZLED
Paelopatides12575PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides12576-
Paelopatides12577-
Paelopatides12578-
Paelopatides12579-
Paelopatides12580SI:CH211-108C17.2-RELATED-RELATED
Paelopatides12581ZGC:195170
Paelopatides12630METALLOPROTEASE
Paelopatides12631MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides12632SORTING NEXIN FAMILY MEMBER
Paelopatides12633SORTING NEXIN FAMILY MEMBER
Paelopatides12634UNCHARACTERIZED
Paelopatides12635CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12636-
Paelopatides12637-
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