About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12548ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Paelopatides12549ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Paelopatides12550-
Paelopatides12551-
Paelopatides12552-
Paelopatides12553PROTEIN CBG26694
Paelopatides12554PROTEIN CBG26694
Paelopatides12555-
Paelopatides12556ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12557PROTEIN CBG26694
Paelopatides12558-
Paelopatides12559PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides12560-
Paelopatides12563ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides12564PROTEIN CBG26694
Paelopatides12565PROTEIN CBG26694
Paelopatides12566-
Paelopatides12567RIBOSOMAL PROTEIN S6 KINASE
Paelopatides12568PROTEIN CBG26694
Paelopatides12569KU AUTOANTIGEN DNA HELICASE
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