About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13144ZINC FINGER PROTEIN
Paelopatides13145REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13146PROTEIN CBG26694
Paelopatides13147NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN
Paelopatides13149-
Paelopatides13150PROTEIN CBG26694
Paelopatides13151PROTEIN CBG26694
Paelopatides13152N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides13153SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides13154-
Paelopatides13155BONUS, ISOFORM C-RELATED
Paelopatides13156PHOSPHATIDYLINOSITOL GLYCAN, CLASS C
Paelopatides13157PHOSPHATIDYLINOSITOL GLYCAN, CLASS C
Paelopatides13158-
Paelopatides13159-
Paelopatides13160NECTIN-RELATED
Paelopatides13161BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
Paelopatides13162-
Paelopatides13163HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H
Paelopatides13164SULFATASE MODIFYING FACTOR 1, 2
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