About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13249REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13250PROTEIN CBG23806
Paelopatides13252D-DOPACHROME DECARBOXYLASE
Paelopatides13253AGAP005574-PA
Paelopatides13254-
Paelopatides13255YALI0E18722P
Paelopatides13256SI:CH211-196P9.1-RELATED
Paelopatides13257PROTEIN CBG26694
Paelopatides13258-
Paelopatides13259CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER
Paelopatides13260-
Paelopatides13265INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides13266ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides13267S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE
Paelopatides13268-
Paelopatides13269EXPRESSED PROTEIN
Paelopatides13270HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides13271-
Paelopatides13272ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides13273DNA LIGASE 4
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