About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13274DNA LIGASE 4
Paelopatides13275PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides13276-
Paelopatides13277-
Paelopatides13279-
Paelopatides13280-
Paelopatides13281ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides13282ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides13283PROTEIN CBG26694
Paelopatides13284FI04487P
Paelopatides13285-
Paelopatides13286RAS GTPASE-ACTIVATING PROTEINS
Paelopatides13287TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED
Paelopatides13288TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides13289EPM2A-INTERACTING PROTEIN 1
Paelopatides13290EPM2A-INTERACTING PROTEIN 1
Paelopatides13291PROTEIN CBG26694
Paelopatides13292CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides13293CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING
Paelopatides13294CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING
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