About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13295-
Paelopatides13296DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides13297DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides13298-
Paelopatides13299VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE
Paelopatides13300-
Paelopatides13301-
Paelopatides13302-
Paelopatides13303SORTING NEXIN-4
Paelopatides13304GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT
Paelopatides133053'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1
Paelopatides13306-
Paelopatides13307-
Paelopatides13308REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13309-
Paelopatides13310REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13311TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides13312XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides13313-
Paelopatides13314N-ACETYLNEURAMINATE SYNTHASE
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