About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13379CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
Paelopatides13380LEUCOKININ RECEPTOR-RELATED
Paelopatides13381POL PROTEIN
Paelopatides13382PARANEOPLASTIC ANTIGEN
Paelopatides13383UNCHARACTERIZED
Paelopatides13384REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13385F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides13386DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides13387PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides13388UBIQUITIN-PROTEIN LIGASE E3C
Paelopatides13389UBIQUITIN-PROTEIN LIGASE E3C
Paelopatides13390-
Paelopatides133913'-5' EXONUCLEASE ERI1-RELATED
Paelopatides13392-
Paelopatides13393KRAB AND ZINC FINGER DOMAIN-CONTAINING
Paelopatides13394-
Paelopatides13395PROTEIN CBG10425
Paelopatides13396PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED
Paelopatides13397-
Paelopatides13398CXC DOMAIN-CONTAINING PROTEIN-RELATED
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