About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13399ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides13400LYSINE-SPECIFIC DEMETHYLASE
Paelopatides13401ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides13402LYSINE-SPECIFIC DEMETHYLASE
Paelopatides13405CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED
Paelopatides13406NETRIN RECEPTOR UNC5
Paelopatides13407APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides13408REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13409BUCENTAUR RELATED
Paelopatides13410APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides13411-
Paelopatides13412-
Paelopatides13413EXPRESSED PROTEIN
Paelopatides13414REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13415INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides13416-
Paelopatides13417ANKYRIN REPEAT-CONTAINING
Paelopatides13418TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Paelopatides13419T-CELL ACUTE LYMPHOCYTIC LEUKEMIA/STEM CELL LEUKEMIA-RELATED
Paelopatides13422ADP-RIBOSYLGLYCOHYDROLASE
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