About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13463EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides13464RETROTRANSPOSON
Paelopatides13465-
Paelopatides13466REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13467-
Paelopatides13468-
Paelopatides13469-
Paelopatides13470GLYCOSIDASE FAMILY 31
Paelopatides13471-
Paelopatides13472REVERSE TRANSCRIPTASES
Paelopatides13473BETA-AMYLOID BINDING PROTEIN-RELATED
Paelopatides13474ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Paelopatides13475GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides13476ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides13477PROTEIN CBG26694
Paelopatides13478PROTEIN CBG26694
Paelopatides13479PROTEIN CBG26694
Paelopatides13480L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides13481VALYL-TRNA SYNTHETASES
Paelopatides13482PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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