About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13524PLEXIN
Paelopatides13525PROTEIN INTURNED
Paelopatides13527-
Paelopatides13528-
Paelopatides13529-
Paelopatides13530ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides13531ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides13532-
Paelopatides13533ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides13534PARANEOPLASTIC ANTIGEN
Paelopatides13535PROTEIN CBG26694
Paelopatides13536FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides13537BUCENTAUR RELATED
Paelopatides13538ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides13539PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides13540RETROTRANSPOSON
Paelopatides13541RETROTRANSPOSON
Paelopatides13542-
Paelopatides13543PROTEIN CBG26694
Paelopatides13544CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE
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