About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13483-
Paelopatides13484SYNAPSE-ASSOCIATED PROTEIN
Paelopatides13485-
Paelopatides13486BAND 7 PROTEIN-RELATED
Paelopatides13487BAND 7 PROTEIN-RELATED
Paelopatides13488NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides13489NETRIN RECEPTOR UNC5
Paelopatides13490TYROSINE-PROTEIN KINASE
Paelopatides13491SULFOTRANSFERASE SULT
Paelopatides13492REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13493-
Paelopatides13494DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Paelopatides13495-
Paelopatides13496DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Paelopatides13497-
Paelopatides13498-
Paelopatides13499RAB11-BINDING PROTEIN RELCH
Paelopatides13500REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13501REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13502UNCHARACTERIZED
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