About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13503-
Paelopatides13504L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides13505F-BOX ONLY PROTEIN
Paelopatides13506-
Paelopatides13507INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides13508SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides13509REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13510REVERSE TRANSCRIPTASES
Paelopatides13511ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
Paelopatides13512TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides13513ENDONUCLEASE-RELATED
Paelopatides13514FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides13515PROTEIN CBG26694
Paelopatides13516PROTEIN CBG26694
Paelopatides13517ENZYMATIC POLYPROTEIN-RELATED
Paelopatides13518PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides13520-
Paelopatides13521FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides13522-
Paelopatides13523DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
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