About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14269MITOGEN-ACTIVATED PROTEIN KINASE-BINDING PROTEIN 1
Paelopatides14270PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides14271-
Paelopatides14272EPM2A-INTERACTING PROTEIN 1
Paelopatides14273FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14274ADIPOR/PROGESTIN RECEPTOR-RELATED
Paelopatides14275-
Paelopatides14276-
Paelopatides14277-
Paelopatides14278-
Paelopatides14279TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides14280ALPHA-GLUCOSIDASE
Paelopatides14281ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
Paelopatides14282-
Paelopatides14283U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
Paelopatides14284CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14285ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
Paelopatides14286UNCHARACTERIZED
Paelopatides14287REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14288EXPRESSED PROTEIN
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