About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15031RING FINGER PROTEIN 25
Paelopatides15032FATTY ACID BINDING PROTEIN
Paelopatides15033CORONIN
Paelopatides15034CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides15035RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED
Paelopatides15036L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides15037-
Paelopatides15038SEPTIN
Paelopatides15039PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides15040ACYL-COA DEHYDROGENASE
Paelopatides15041-
Paelopatides15042-
Paelopatides15043-
Paelopatides15044-
Paelopatides15045-
Paelopatides15046SWI5-DEPENDENT RECOMBINATION DNA REPAIR PROTEIN 1 HOMOLOG
Paelopatides15047AMINO ACID TRANSPORTER
Paelopatides15048REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15049REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15050-
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