About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15008FATTY-ACID AMIDE HYDROLASE
Paelopatides15009-
Paelopatides15010PARANEOPLASTIC ANTIGEN
Paelopatides15011-
Paelopatides15012-
Paelopatides150133'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN
Paelopatides150143'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN
Paelopatides15015-
Paelopatides15016VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Paelopatides150172',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE
Paelopatides15019TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER
Paelopatides15020GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides15021BONUS, ISOFORM C-RELATED
Paelopatides15022-
Paelopatides15023GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Paelopatides15024-
Paelopatides15025ALPHA-TECTORIN-RELATED
Paelopatides15028EXODEOXYRIBONUCLEASE III
Paelopatides15029APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides15030PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
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