About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15296RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
Paelopatides15297TRANSCRIPTION ELONGATION REGULATOR 1
Paelopatides15298DNA POLYMERASE I
Paelopatides15299RETROTRANSPOSON
Paelopatides15300RETROTRANSPOSON
Paelopatides15301PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides15302HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides15303UNCHARACTERIZED
Paelopatides15304REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15305TYROSINE-PROTEIN KINASE
Paelopatides15306PROTEIN CBG26694
Paelopatides15307ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides15308-
Paelopatides15309REVERSE TRANSCRIPTASES
Paelopatides15310ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides15311-
Paelopatides15312PLEXIN
Paelopatides15313SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL
Paelopatides15314ENZYMATIC POLYPROTEIN-RELATED
Paelopatides15315POL PROTEIN
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