About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15484ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides15485-
Paelopatides15486PROTEIN CBG26694
Paelopatides15487FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides15488FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides15489ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides15490-
Paelopatides15491REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15492TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
Paelopatides15493PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG
Paelopatides15494-
Paelopatides15495SURVIVAL MOTOR NEURON-LIKE PROTEIN 1
Paelopatides15496-
Paelopatides15497EG:EG0003.4 PROTEIN-RELATED
Paelopatides15498GAG-RELATED PROTEIN
Paelopatides15499EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides15500NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED
Paelopatides15501SI:CH211-262H13.3-RELATED-RELATED
Paelopatides15502L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides15503-
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