About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15420-
Paelopatides15421POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides15422BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Paelopatides15423-
Paelopatides15424-
Paelopatides15425-
Paelopatides15426TESMIN/TSO1-RELATED
Paelopatides15427DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides15430AGAP008221-PA
Paelopatides15431AGAP008221-PA
Paelopatides15432PROTEIN CBG26694
Paelopatides15433PROTEIN CBG26694
Paelopatides15434PHOSPHATASE WITH HOMOLOGY TO TENSIN
Paelopatides15435SERINE/THREONINE PROTEIN KINASE
Paelopatides15436SERINE/THREONINE-PROTEIN KINASE PLK
Paelopatides15437CALPONIN
Paelopatides15438VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Paelopatides15439UNCHARACTERIZED
Paelopatides15440-
Paelopatides15441FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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