About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15379SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides15380-
Paelopatides15381-
Paelopatides15382-
Paelopatides15383GLYCOGEN PHOSPHORYLASE
Paelopatides15384-
Paelopatides15385CATION TRANSPORT PROTEIN CHAC-RELATED
Paelopatides15386CATION TRANSPORT PROTEIN CHAC-RELATED
Paelopatides15387NFRKB-RELATED
Paelopatides15388SERINE HYDROLASE RBBP9
Paelopatides15389CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER
Paelopatides15390-
Paelopatides15391CHIMERIN FAMILY MEMBER
Paelopatides15392-
Paelopatides15393PEPTIDASE
Paelopatides15394CHIMERIN FAMILY MEMBER
Paelopatides15395-
Paelopatides15396PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides15398COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides15399-
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