About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16547INTEGRIN BETA SUBUNIT
Paelopatides16548INTEGRIN BETA SUBUNIT
Paelopatides16549-
Paelopatides16550AMINOTRANSFERASE
Paelopatides16551AMINOTRANSFERASE
Paelopatides16552-
Paelopatides16553GUANYLYL CYCLASE
Paelopatides16554REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides16555BUCENTAUR RELATED
Paelopatides16556NATRIURETIC PEPTIDE RECEPTOR 3-RELATED
Paelopatides16557-
Paelopatides16558RETROTRANSPOSON
Paelopatides16559PEPTIDASE
Paelopatides16561BONUS, ISOFORM C-RELATED
Paelopatides16562BONUS, ISOFORM C-RELATED
Paelopatides16563TRANSPOSON
Paelopatides16564UNCHARACTERIZED
Paelopatides16565-
Paelopatides16566FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16567PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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