About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17185MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
Paelopatides17186-
Paelopatides17187-
Paelopatides17188SI:CH211-108C17.2-RELATED-RELATED
Paelopatides17189-
Paelopatides17190-
Paelopatides17191REVERSE TRANSCRIPTASES
Paelopatides17192ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17193-
Paelopatides17194NETRIN RECEPTOR UNC5
Paelopatides17195REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17196-
Paelopatides17197-
Paelopatides17198ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17199FORKHEAD BOX PROTEIN G1
Paelopatides17200-
Paelopatides17201REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17202-
Paelopatides17203URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10
Paelopatides17204GLYCOSIDASE FAMILY 31
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