About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17080TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides17081ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17082TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides17101ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17103ENDONUCLEASE-RELATED
Paelopatides17104ENZYMATIC POLYPROTEIN-RELATED
Paelopatides17105TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides17106PARANEOPLASTIC ANTIGEN
Paelopatides17107TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides17108-
Paelopatides17109PROTEIN CBG26694
Paelopatides17112-
Paelopatides17113TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides17114OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN
Paelopatides17115ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides17116-
Paelopatides17117-
Paelopatides17118REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17119FER-1-LIKE
Paelopatides17120NEUROTRANSMITTER GATED ION CHANNEL
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