About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17246-
Paelopatides17247ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17248SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides17249-
Paelopatides17252APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides17253APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides17256THIOSULFATE SULFERTANSFERASE
Paelopatides17257PROTEIN CBG26694
Paelopatides17258L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides17259REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17260HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides17265-
Paelopatides17266ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17267-
Paelopatides17268PROTEIN CBG26694
Paelopatides17269PROTEIN CBG26694
Paelopatides17270PROTEIN CBG26694
Paelopatides17271PROTEIN DISPATCHED HOMOLOG 3
Paelopatides17272LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34
Paelopatides17273ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED
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