About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17060INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides17061ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17062NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides17063REVERSE TRANSCRIPTASES
Paelopatides17064REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17065LEUCOKININ RECEPTOR-RELATED
Paelopatides17066MEVALONATE KINASE/GALACTOKINASE
Paelopatides17067PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE
Paelopatides17068-
Paelopatides17069CHROMOSOME TRANSMISSION FIDELITY FACTOR 18
Paelopatides17070GTP CYCLOHYDROLASE I
Paelopatides17071PLEXIN
Paelopatides17072FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides17073TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP
Paelopatides17074-
Paelopatides17075PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides17076RETROTRANSPOSON
Paelopatides17077RETROTRANSPOSON
Paelopatides17078CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17079ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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