About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17274-
Paelopatides17275TTC17 PROTEIN
Paelopatides17276CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17277REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17278HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17279REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17280MYOSIN VII, XV
Paelopatides17281-
Paelopatides17282MYOSIN VII, XV
Paelopatides17283MYOSIN VII, XV
Paelopatides17284MYOSIN VII, XV
Paelopatides17285-
Paelopatides17286RNA-BINDING MOTIF PROTEIN, X-LINKED 2
Paelopatides17287-
Paelopatides17288ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17289EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides17290C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
Paelopatides17291-
Paelopatides17292TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER
Paelopatides17293-
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