About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17711-
Paelopatides17712TRYPSIN-RELATED
Paelopatides17713ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17714-
Paelopatides17715ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17716PROTEIN CBG26694
Paelopatides17717REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17718-
Paelopatides17719CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17720POL PROTEIN
Paelopatides17721PROTEIN CBG26694
Paelopatides17722CENTROSOMAL PROTEIN 2
Paelopatides17723ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17724ENZYMATIC POLYPROTEIN-RELATED
Paelopatides17725PROTEIN CBG26694
Paelopatides17726-
Paelopatides17727-
Paelopatides17728ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17729MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
Paelopatides17730BETA-ALA-HIS DIPEPTIDASE
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