About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17588XK-RELATED PROTEIN
Paelopatides17589SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides17590CONTACTIN 5
Paelopatides17591OXIDASE/PEROXIDASE
Paelopatides17592POL PROTEIN
Paelopatides17593MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides17594LITHOSTATHINE
Paelopatides17595BONUS, ISOFORM C-RELATED
Paelopatides17596ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides17597PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides17598THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
Paelopatides17599MONOACYLGLYCEROL LIPASE
Paelopatides17600-
Paelopatides17601PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides17602REVERSE TRANSCRIPTASES
Paelopatides17603-
Paelopatides17604PROTEIN CBG26694
Paelopatides17605REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides17606-
Paelopatides17607-
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